| 1 | Indian Institute of Technology Bombay | Mumbai |
| 2 | Narsee Monjee Institute of Management and Higher Studies | Mumbai |
| 3 | Savitribai Phule Pune University | Pune |
| 4 | Tata Institute of Fundamental Research | Mumbai |
| 5 | Tata Institute of Social Sciences | Mumbai |
| 6 | University of Mumbai | Mumbai |
| 7 | Indira Gandhi Institute of Development Research | Mumbai |
| 8 | Indian Institute of Science Education and Research, Pune | Pune |
| 9 | Symbiosis International University | Pune |
| 10 | Visvesvaraya National Institute of Technology | Nagpur |
| 11 | Padmashree Dr. D.Y. Patil Vidyapith | Navi Mumbai |
| 12 | Kavayitri Bahinabai Chaudhari North Maharashtra University | Jalgaon ... |
| 13 | International Institute for Population Sciences | Mumbai |
| 14 | Swami Ramanand Teerth Marathwada University | Nanded |
| 15 | Shivaji University | Kolhapur |
| 16 | Dr. Vishwanath Karad MIT World Peace University | Pune |
| 17 | Bharati Vidyapeeth Deemed University | Pune ... |
| 18 | Sant Gadge Baba Amravati University | Amravati |
| 19 | Flame University | Pune |
| 20 | Punyashlok Ahilyadevi Holkar University, Solapur | Solapur |
| 21 | Maharashtra University of Health Sciences | Nashik |
| 22 | Institute of Chemical Technology | Mumbai |
| 23 | Dr. Babasaheb Ambedkar Marathwada University | Aurangabad |
| 24 | Dr. D.Y. Patil Vidyapeeth | Pune |
| 25 | Gokhale Institute of Politics and Economics | Pune |
| 26 | Shreemati Nathibai Damodar Thackersey Women's University | Mumbai |
| 27 | Pravara Institute of Medical Sciences | Loni |
| 28 | Rashtrasant Tukadoji Maharaj Nagpur University | Nagpur |
| 29 | Dr. Babasaheb Ambedkar Technological University | Lonere |
| 30 | Central Institute of Fisheries Education | Mumbai |
| 31 | Homi Bhabha National Institute | Mumbai |
| 32 | Kavi Kulguru Kalidas Sanskrit Vishwavidyalaya | Nagpur |
| 33 | Vasantrao Naik Marathwada Krishi Vidyapeeth | Parbhani ... |
| 34 | Mahatma Phule Krishi Vidyapeeth | Rahuri |
| 35 | Tilak Maharashtra Vidyapeeth | Pune |
| 36 | Dr. Balasaheb Sawant Konkan Krishi Vidyapeeth | Dapoli |
| 37 | Mahatma Gandhi Antarrashtriya Hindi Vishwavidyalaya | Wardha |
| 38 | Dr. Panjabrao Deshmukh Krishi Vidyapeeth | Akola |
| 39 | Sandip University | Nashik ... |
| 40 | Gondwana University | Gadchiroli |
| 41 | Maharashtra Animal and Fishery Sciences University | Nagpur |
| 42 | MIT Art Design and Technology University | Pune |
| 43 | MGM Institute of Health Sciences | Navi Mumbai |
| 44 | Deccan College Post-Graduate and Research Institute | Pune |
| 45 | Vishwakarma University | Pune |
| 46 | Datta Meghe Institute of Medical Sciences | Nagpur |
| 47 | Krishna Institute of Medical Sciences | Karad |
| 48 | Ajeenkya D.Y. Patil University | Lohegaon |
| 49 | Maharashtra National Law University, Nagpur | Nagpur |
| 50 | Maharashtra National Law University Mumbai | Mumbai |
| 51 | Maharashtra National Law University, Aurangabad | Aurangabad |
| 52 | Sanjay Ghodawat University | Kolhapur |
| 53 | Spicer Adventist University | Pune |
